Thomomys (Megascapheus) bottae subsp. nigricans Rhoads 1895
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
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Thomomys (Megascapheus) bottae subsp. bottae
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
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Thomomys (Megascapheus) bottae subsp. mearnsi
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
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Thomomys (Megascapheus) bottae subsp. albatus
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
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Thomomys (Megascapheus) bottae subsp. aureus
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
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Thomomys (Megascapheus) bottae subsp. perpallidus Merriam 1886
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
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Thomomys (Megascapheus) bottae subsp. modicus Goldman 1931
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
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Thomomys (Megascapheus) bottae subsp. pascalis Merriam 1901
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 867
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Thomomys (Megascapheus) bottae subsp. planirostris Burt 1931
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 867
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Thomomys (Megascapheus) bottae subsp. catalinae Goldman 1931
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
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Thomomys (Megascapheus) bottae subsp. laticeps
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 867
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Thomomys (Megascapheus) bottae subsp. pusillus Goldman 1931
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 867
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Thomomys (Megascapheus) bottae subsp. basilicae Benson and Tillotson 1940
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 866
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Thomomys (Megascapheus) bottae subsp. navus Merriam 1901
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 867
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Thomomys (Megascapheus) bottae subsp. peramplus Goldman 1931
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 867
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Thomomys (Megascapheus) bottae
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 866
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Thomomys (Megascapheus) bottae subsp. anitae J. A. Allen 1898
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 866
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Thomomys (Megascapheus) bottae subsp. desertorum
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 867
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Thomomys (Megascapheus) bottae subsp. fulvus
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Wilson, Don E. & Reeder, DeeAnn, 2005, Order Rodentia - Family Geomyidae, Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2, Baltimore: The Johns Hopkins University Press, pp. 859-870
: 867
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